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[Solved] Failed to emerge sys-kernel/gentoo-kernel

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Oiher Poplawski
n00b
n00b

Joined: 14 Aug 2024
Posts: 5

Posted: Wed Aug 14, 2024 7:16 pm Post subject: [Solved] Failed to emerge sys-kernel/gentoo-kernel

Hello,

I have gentoo installed on a VPS and recently I have been running into some issues when attempting to update the system.
The gentoo-kernel package always fails on the same spot and after doing my fair bit of research I am at a complete loss.

I tried to manually compile and install the kernel and it works. But when emerging the compilation fails.

Any suggestions or any idea of why this might be will be greatly appreciated.

/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/temp/build.log

Code:

x86_64-pc-linux-gnu-gcc: fatal error: Killed signal terminated program cc1
compilation terminated.
make[5]: *** [/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/work/linux-6.6/scripts/Makefile.build:243: arch/x86/xen/setup.o] Error 1
make[4]: *** [/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/work/linux-6.6/scripts/Makefile.build:480: arch/x86/xen] Error 2
make[3]: *** [/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/work/linux-6.6/scripts/Makefile.build:480: arch/x86] Error 2
make[2]: *** [/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/work/linux-6.6/Makefile:1921: .] Error 2
make[1]: *** [/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/work/linux-6.6/Makefile:234: __sub-make] Error 2
make[1]: Leaving directory '/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/work/build'
make: *** [Makefile:234: __sub-make] Error 2
* ERROR: sys-kernel/gentoo-kernel-6.6.41::gentoo failed (compile phase):
* emake failed

emerge --info '=sys-kernel/gentoo-kernel-6.6.41::gentoo'

Code:

Portage 3.0.65 (python 3.12.3-final-0, default/linux/amd64/23.0/no-multilib/hardened, gcc-13, glibc-2.39-r6, 6.6.41-gentoo-dist-hardened x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-6.6.41-gentoo-dist-hardened-x86_64-AMD_EPYC-Rome_Processor-with-glibc2.39
KiB Mem: 983732 total, 649520 free
KiB Swap: 2097148 total, 2030132 free
Timestamp of repository gentoo: Wed, 14 Aug 2024 00:45:00 +0000
Head commit of repository gentoo: b8029cfa8bd51084e4c3f836212fe0b3f1b5702b
sh bash 5.2_p26-r6
ld GNU ld (Gentoo 2.42 p3) 2.42.0
app-misc/pax-utils: 1.3.7::gentoo
app-shells/bash: 5.2_p26-r6::gentoo
dev-build/autoconf: 2.71-r7::gentoo
dev-build/automake: 1.16.5-r2::gentoo
dev-build/cmake: 3.28.5::gentoo
dev-build/libtool: 2.4.7-r4::gentoo
dev-build/make: 4.4.1-r1::gentoo
dev-build/meson: 1.4.1::gentoo
dev-lang/perl: 5.38.2-r3::gentoo
dev-lang/python: 3.12.3-r1::gentoo
dev-lang/rust: 1.79.0::gentoo
sys-apps/baselayout: 2.15::gentoo
sys-apps/openrc: 0.54.2::gentoo
sys-apps/sandbox: 2.38::gentoo
sys-devel/binutils: 2.42-r1::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/gcc: 13.3.1_p20240614::gentoo
sys-devel/gcc-config: 2.11::gentoo
sys-kernel/linux-headers: 6.6-r1::gentoo (virtual/os-headers)
sys-libs/glibc: 2.39-r6::gentoo
Repositories:

gentoo
location: /var/db/repos/gentoo
sync-type: rsync
sync-uri: rsync://rsync.gentoo.org/gentoo-portage
priority: -1000
volatile: False
sync-rsync-verify-metamanifest: yes
sync-rsync-verify-max-age: 3
sync-rsync-extra-opts:
sync-rsync-verify-jobs: 1

Binary Repositories:

gentoobinhost
priority: 1
sync-uri: https://distfiles.gentoo.org/releases/amd64/binpackages/23.0/x86-64

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE @FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -mharden-sls=all -fstack-protector-strong -fstack-clash-protection -fcf-protection"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.2/ext-active/ /etc/php/cgi-php8.2/ext-active/ /etc/php/cli-php8.2/ext-active/ /etc/php/fpm-php8.2/ext-active/ /etc/php/phpdbg-php8.2/ext-active/ /etc/sandbox.d"
CXXFLAGS="-march=native -O2 -pipe -mharden-sls=all -fstack-protector-strong -fstack-clash-protection -fcf-protection"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--jobs 1 --load-average 0.9"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=native -O2 -pipe -mharden-sls=all -fstack-protector-strong -fstack-clash-protection -fcf-protection"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps
sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe -mharden-sls=all -fstack-protector-strong -fstack-clash-protection -fcf-protection"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs"
LEX="flex"
MAKEOPTS="-j1"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl amd64 asm bzip2 caps cet crypt cxx firmware gdbm gnutls graphite grub hardened iconv ipv6 libtirpc lto minimal multiarch nls openmp pam pcre pgo pic pie readline seccomp ssl ssp strip test-rust unicode xattr xtpax zlib" ABI_X86="64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk
hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres15"
PYTHON_SINGLE_TARGET="python3_12" PYTHON_TARGETS="python3_12" RUBY_TARGETS="ruby31 ruby32" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK,
LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS

emerge -pqv '=sys-kernel/gentoo-kernel-6.6.41::gentoo'

Code:

[ebuild NS ] sys-kernel/gentoo-kernel-6.6.41 [6.6.32] USE="hardened initramfs strip -debug (-generic-uki) -modules-compress -modules-sign -savedconfig -secureboot -test"
[ebuild U ] virtual/dist-kernel-6.6.41 [6.6.32]

* IMPORTANT: 20 news items need reading for repository 'gentoo'.
* Use eselect news read to view new items.

Last edited by Oiher Poplawski on Thu Aug 15, 2024 10:50 am; edited 1 time in total

AprilGrimoire
n00b
n00b

Joined: 05 Jun 2020
Posts: 52

Posted: Wed Aug 14, 2024 7:42 pm Post subject: Re: Failed to emerge sys-kernel/gentoo-kernel - emake failed

Oiher Poplawski wrote:

Code:

emerge --info '=sys-kernel/gentoo-kernel-6.6.41::gentoo'

Code:

emerge -pqv '=sys-kernel/gentoo-kernel-6.6.41::gentoo'

Code:

Hi!

Have you tried running make in the directory

Code:

/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/work/build

?

The build.log file seems not very detailed. Did you enable -v when emerging?

Oiher Poplawski
n00b
n00b

Joined: 14 Aug 2024
Posts: 5

Posted: Wed Aug 14, 2024 7:55 pm Post subject: Re: Failed to emerge sys-kernel/gentoo-kernel - emake failed

AprilGrimoire wrote:

Hi!

Have you tried running make in the directory

Code:

/var/tmp/portage/sys-kernel/gentoo-kernel-6.6.41/work/build

?

The build.log file seems not very detailed. Did you enable -v when emerging?

Yest I tried to run make by hand and it works. I can compile and install the kernel this way.
Although this brings some new problems like openvpn failing to compile, due to an mismatch between the installed kernel and the dist-kernel.

emerging with --verbose gives the same output

grknight
Retired Dev

Joined: 20 Feb 2015
Posts: 1837

Posted: Wed Aug 14, 2024 8:18 pm Post subject:

Oiher Poplawski wrote:

Code:

x86_64-pc-linux-gnu-gcc: fatal error: Killed signal terminated program cc1

Code:

KiB Mem: 983732 total, 649520 free
KiB Swap: 2097148 total, 2030132 free

This is generally a out-of-memory condition and 649M is not a lot to compile with. You can verify this in dmesg.
Even if swap is used, a total of 2.5GiB is barely enough.

My suggestion, use a bin kernel or increase the VPS size for RAM.

Oiher Poplawski
n00b
n00b

Joined: 14 Aug 2024
Posts: 5

Posted: Wed Aug 14, 2024 8:30 pm Post subject:

grknight wrote:

Thanks for the answer.

I thought that it could be related to memory, but it still bugs me that it can be compiled by running make manually.

If emerging is not possible is there a way to let the system know that the kernel is already installed ?

flexibeast
Guru
Guru

Joined: 04 Apr 2022
Posts: 382
Location: Naarm/Melbourne, Australia

Posted: Wed Aug 14, 2024 11:24 pm Post subject:

Oiher Poplawski wrote:

is there a way to let the system know that the kernel is already installed ?

Refer to the page on the wiki for package.provided.

Juippisi
Developer

Joined: 30 Sep 2005
Posts: 742
Location: /home

Posted: Thu Aug 15, 2024 5:12 am Post subject:

Oiher Poplawski wrote:

I thought that it could be related to memory, but it still bugs me that it can be compiled by running make manually.

Manual make most likely isn't using as high MAKEOPTS as emerge is. You can try reducing MAKEOPTS too.

Quote:

If emerging is not possible is there a way to let the system know that the kernel is already installed ?

Although and as grknight hinted, why not use the gentoo-kernel-bin package?

Zucca
Moderator

Joined: 14 Jun 2007
Posts: 3617
Location: Rasi, Finland

Posted: Thu Aug 15, 2024 9:30 am Post subject:

Code:

MAKEOPTS="-j1"

indicates, that this is ok.
I don't know if it's relevant anymore, but having -pipe in your *FLAGS increases memory usage.
Also

Code:

PORTAGE_TMPDIR="/var/tmp"

is this directory in tmpfs, using memory?
_________________
..: Zucca :..
Gentoo IRC channels reside on Libera.Chat.
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Quote:

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Oiher Poplawski
n00b
n00b

Joined: 14 Aug 2024
Posts: 5

Posted: Thu Aug 15, 2024 10:44 am Post subject:

Zucca wrote:

Code:

MAKEOPTS="-j1"

indicates, that this is ok.
I don't know if it's relevant anymore, but having -pipe in your *FLAGS increases memory usage.
Also

Code:

PORTAGE_TMPDIR="/var/tmp"

is this directory in tmpfs, using memory?

Thanks for the advice,

I tried to compile removing -pipe and changing the compilation dir but still no luck.

Oiher Poplawski
n00b
n00b

Joined: 14 Aug 2024
Posts: 5

Posted: Thu Aug 15, 2024 10:48 am Post subject: Conclusions

Thanks all for the help. It does seem that the machine does not have enough memory for the task. I will try the advice of using the package.provided option, or maybe compile the kernel on a more powerful machine. For the meantime gentoo-kernel-bin works.

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