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zBrain
Apprentice
Joined: 14 Apr 2006
Posts: 195
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 Posted: Sat Oct 05, 2024 11:38 pm Post subject: What is an internal collision? And how to fix? |
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| Code: | * checking 485 files for package collisions
* Package 'sys-apps/shadow-4.14.2' has internal collisions between non-
* identical files (located in separate directories in the installation
* image (${D}) corresponding to merged directories in the target
* filesystem (${ROOT})):
*
* /usr/bin/passwd
* /bin/passwd
* /usr/bin/passwd
* Differences: type, mode
*
* Package 'sys-apps/shadow-4.14.2' NOT merged due to internal collisions
* between non-identical files. If necessary, refer to your elog messages
* for the whole content of the above message. |
[Administrator edit: added [code] tags to preserve output layout. -Hu] |
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zBrain
Apprentice
Joined: 14 Apr 2006
Posts: 195
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| Posted: Sun Oct 06, 2024 12:41 am Post subject: |
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I just realized its likely because of split-usr being forced
| Code: | [binary R ] app-alternatives/awk-4::gentoo USE="gawk (split-usr*) -busybox -mawk -nawk" 0 KiB
[binary R ] sys-apps/coreutils-9.5::gentoo USE="acl nls openssl (split-usr*) (xattr) -caps -gmp -hostname -kill -multicall (-selinux) -static -test -vanilla -verify-sig" 0 KiB
[binary R ] sys-apps/shadow-4.14.2:0/4::gentoo USE="acl nls pam (split-usr*) xattr -audit -cracklib (-selinux) -skey -su -systemd -verify-sig" 0 KiB
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All these packages are doing it. Any ideas?
[Administrator edit: added [code] tags to preserve output layout. -Hu] |
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Hu
Administrator
Joined: 06 Mar 2007
Posts: 22477
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| Posted: Sun Oct 06, 2024 12:51 am Post subject: |
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| The output you quoted in the first post describes an internal collision. What is the output of emerge --info? I suspect you are pulling split-usr binaries into a merged-usr system. |
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zBrain
Apprentice
Joined: 14 Apr 2006
Posts: 195
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| Posted: Sun Oct 06, 2024 12:58 am Post subject: |
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That answer could be complicated. I'm updating an old server using portage in a chroot.
emerge --info --root=/mnt/host --config-root=/mnt/host
| Code: |
Portage 3.0.65 (python 3.12.3-final-0, !../../usr/portage/profiles/default/linux/amd64/17.1/hardened, gcc-9.3.0, glibc-2.39-r6, 4.14.83-gentoo x86_64)
=================================================================
System uname: Linux-4.14.83-gentoo-x86_64-Common_KVM_processor-with-glibc2.39
KiB Mem: 8158640 total, 1947788 free
KiB Swap: 0 total, 0 free
Timestamp of repository gentoo: Sat, 20 Jul 2024 17:45:00 +0000
Head commit of repository gentoo: 74a613d51782ffe523d0a6cdd772dfc4a1659284
Head commit of repository RHWSI: a24b5e37f303fa9368ec1913a4c0aafd783aead1
Timestamp of repository mva: Wed, 02 Oct 2024 09:19:05 +0000
Head commit of repository mva: 8cc7684b0c37911bc38a20703b9991b8dec1e177
sh bash 5.2_p26-r6
ld GNU ld (Gentoo 2.42 p3) 2.42.0
app-misc/pax-utils: 1.3.7::gentoo
app-shells/bash: 5.2_p26-r6::gentoo
dev-build/autoconf: 2.69-r5::gentoo
dev-build/automake: 1.12.6::gentoo, 1.14.1::gentoo, 1.15.1-r2::gentoo, 1.16.2-r1::gentoo
dev-build/cmake: 3.18.5::gentoo
dev-build/libtool: 2.4.6-r6::gentoo
dev-build/make: 4.4.1-r1::gentoo
dev-build/meson: 0.56.2::gentoo
dev-lang/perl: 5.38.2-r3::gentoo
dev-lang/python: 2.7.18_p9::gentoo, 3.6.11-r2::gentoo, 3.7.8-r2::gentoo, 3.8.9_p2::gentoo, 3.9.4_p1::gentoo
sys-apps/baselayout: 2.15::gentoo
sys-apps/openrc: 0.42.1-r1::gentoo
sys-apps/sandbox: 2.38::gentoo
sys-devel/binutils: 2.29.1-r1::gentoo, 2.30-r4::gentoo, 2.33.1-r1::gentoo, 2.35.2::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/gcc: 9.3.0-r1::gentoo, 10.2.0-r5::gentoo, 13.3.1_p20240614::gentoo
sys-devel/gcc-config: 2.11::gentoo
sys-kernel/linux-headers: 6.6-r1::gentoo (virtual/os-headers)
sys-libs/glibc: 2.39-r6::gentoo
Repositories:
gentoo
location: /usr/portage
sync-type: rsync
sync-uri: rsync://fresh.registeredhosting.ca/gentoo-portage
priority: -1000
volatile: True
sync-rsync-verify-metamanifest: no
sync-rsync-extra-opts:
sync-rsync-verify-max-age: 3
sync-rsync-verify-jobs: 1
RHWSI
location: /var/lib/repos/RHWSI
sync-type: git
sync-uri: https://gogs.registeredhosting.ca/RHWSI/gentoo-overlay.git
masters: gentoo
volatile: True
mva
location: /var/db/repos/mva
sync-type: git
sync-uri: https://github.com/gentoo-mirror/mva.git
masters: gentoo
volatile: False
Binary Repositories:
fresh
priority: 1
sync-uri: ssh://binpkguser@fresh.registeredhosting.ca/usr/portage/packages
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.4/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="-j3 --with-bdeps=y --quiet-build=y --complete-graph --binpkg-changed-deps=n"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
MAKEOPTS="-j7"
PKGDIR="/var/cache/binpkgs"
PORTAGE_BINHOST="ssh://binpkguser@fresh.registeredhosting.ca/usr/portage/packages"
PORTAGE_CONFIGROOT="/mnt/host/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl amd64 bzip2 cet cli crypt dri fortran gdbm hardened iconv ipv6 libtirpc mmx multilib ncurses nls openmp pam pcre pic pie readline seccomp split-usr sse sse2 ssl ssp test-rust unicode xattr xtpax zlib" ABI_X86="64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-2 php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_12" PYTHON_TARGETS="python3_12" RUBY_TARGETS="ruby31 ruby32" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
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zBrain
Apprentice
Joined: 14 Apr 2006
Posts: 195
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| Posted: Sun Oct 06, 2024 1:22 am Post subject: |
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Just as a note - I never ran the script to merge usr.
I really hope this system isn't borked  |
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Portage & Programming
