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jfo
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Joined: 07 Sep 2015
Posts: 60

PostPosted: Mon Jun 03, 2024 6:54 pm    Post subject: profile update 23 fails Reply with quote

Hello

this weekend I attempted to update to profile 23. In brief, I followed all instructions
apparently without any issue until I ran
Code:

emerge --emptytree -p @world


I have something like 3300 packages. Rebuilding packages went normally until after
processing something like 1500 packages emerge stopped with no helpful message.
Code:

emerge --resume --skip-first

returned "nothing left to do".

When I run
Code:

emerge --emptytree -p @world

I get
Code:
 
These are the packages that would be merged, in order:

Calculating dependencies  ... ...... ...... done!
Dependency resolution took 133.25 s (backtrack: 2/20).

[ebuild   R    ] sys-devel/gnuconfig-20240101
[ebuild   R    ] virtual/libintl-0-r2
[ebuild   R    ] virtual/libiconv-0-r2
[ebuild   R    ] media-libs/libogg-1.3.5-r1
[ebuild   R    ] dev-libs/libffi-3.4.6
[ebuild   R    ] media-libs/giflib-5.2.2
[ebuild   R    ] dev-libs/lzo-2.10
[ebuild   R    ] sys-apps/which-2.21
[ebuild   R    ] app-text/libpaper-2.1.3
[ebuild   R    ] net-dns/c-ares-1.29.0
[ebuild   R    ] app-crypt/argon2-20190702-r1
[ebuild   R    ] app-misc/mime-types-2.1.54
....
[ebuild   R    ] dev-tex/biber-2.19  PERL_FEATURES="(-debug) -ithreads% -quadmath%"

!!! The following update(s) have been skipped due to unsatisfied dependencies
!!! triggered by backtracking:

dev-lang/spidermonkey:115



As far as I can tell the issue seems to be that spidermonkey wants rust <1.78
even though my system has rust 1.78.0 installed. However,

Code:

emerge -Dup @world

returns nothing whatsoever.

spiderdemonkey is needed by dev-libs/gjs, which in turn is a dependency of app-crypt/libsecret.

At this point I am not sure at all how to proceed. Any help/suggestions would appreciated.
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ian.au
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Joined: 07 Apr 2011
Posts: 606
Location: Australia

PostPosted: Mon Jun 03, 2024 9:44 pm    Post subject: Reply with quote

Code:
!!! The following update(s) have been skipped due to unsatisfied dependencies
!!! triggered by backtracking:

Did you try a different value for backtracking? ie.
Code:
emerge --backtrack=0 -avuDpt @world

3,300 rebuilds, ugh.
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jfo
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Joined: 07 Sep 2015
Posts: 60

PostPosted: Tue Jun 04, 2024 1:56 am    Post subject: Reply with quote

For some reason portage continues to insist on rust-1.78 even though in principle anyone of the dependencies should be satisfied by rust < 1.78.

Code:

equery depends rust
 * These packages depend on rust:
dev-lang/ruby-3.2.4 (jit ? >=virtual/rust-1.58.1)
                    (jit ? >=virtual/rust-1.58.1)
dev-lang/spidermonkey-115.11.0 (clang ? virtual/rust:0/llvm-18)
                               (clang ? virtual/rust:0/llvm-17)
                               (clang ? virtual/rust:0/llvm-16)
                               (clang ? virtual/rust:0/llvm-15)
                               (!clang ? <virtual/rust-1.78)
                               (!elibc_glibc ? <dev-lang/rust-1.78)
dev-python/cryptography-42.0.7 (>=virtual/rust-1.56.0)
dev-python/setuptools-rust-1.9.0 (virtual/rust)
                                 (test ? virtual/rust)
dev-util/bindgen-0.68.1 (virtual/rust)
                        (virtual/rust)
                        (>=virtual/rust-1.53)
dev-util/cbindgen-0.26.0 (>=virtual/rust-1.53)
gnome-base/librsvg-2.57.3 (>=virtual/rust-1.70.0[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_s390_32(-)?,abi_s390_64(-)?])
                          (>=virtual/rust-1.53)
media-libs/mesa-24.1.0-r1 (opencl ? >=virtual/rust-1.62.0)
                          (video_cards_nvk ? >=virtual/rust-1.74.1)
net-analyzer/gping-1.16.1-r1 (>=virtual/rust-1.53)
sys-apps/lsd-1.1.2-r1 (>=virtual/rust-1.53)
sys-devel/gcc-14.1.1_p20240518 (rust ? virtual/rust)
www-client/chromium-126.0.6478.17 (>=virtual/rust-1.72.0[profiler(-)])


I removed rust-bin-1.78 and the corresponding virtual/rust.
I still see
Code:

emerge -1p virtual/rust rust-bin

These are the packages that would be merged, in order:

Calculating dependencies... done!
Dependency resolution took 9.15 s (backtrack: 1/20).

[ebuild  N     ] dev-lang/rust-bin-1.77.1  USE="profiler rustfmt (-big-endian) -clippy -doc (-prefix) -rust-analyzer -rust-src -verify-sig" ABI_X86="32 (64) (-x32)" CPU_FLAGS_X86="sse2"
[ebuild  N     ] virtual/rust-1.77.1  USE="profiler rustfmt" ABI_X86="32 (64) (-x32)"

virtual/rust:0

 selected: (virtual/rust-1.77.1:0/llvm-17::gentoo, ebuild scheduled for merge)
 skipped: (virtual/rust-1.78.0:0/llvm-18::gentoo, ebuild scheduled for merge) (see unsatisfied dependency below)



Finally, I removed a couple of unneeded packages that somehow portage insisted needed rust-1.78.
Now, portage still claims that rust-1.78 is required by dev-util/maturin.
maturin has been uninstalled; furthermore
Code:

equery depends maturin
 * These packages depend on maturin:

returns nothing. At this point I am stumped.


Code:

emerge --backtrack=0 -avuDpt @world

These are the packages that would be merged, in reverse order:

Calculating dependencies... done!
Dependency resolution took 31.66 s (backtrack: 0/0).

[nomerge       ] dev-python/spyder-5.5.4::gentoo  USE="-doc -test" PYTHON_TARGETS="python3_11 -python3_10 -python3_12"
[ebuild  N     ]  dev-python/jellyfish-1.0.4::gentoo  USE="-debug -test" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12 -python3_13" 0 KiB
[nomerge       ] dev-python/spyder-notebook-0.5.1::gentoo  USE="-test" PYTHON_TARGETS="python3_11 -python3_10"
[nomerge       ]  dev-python/notebook-7.2.0::gentoo  USE="-test" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12"
[nomerge       ]   dev-python/jupyter-server-2.14.1::gentoo  USE="-test" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12"
[nomerge       ]    dev-python/jupyter-events-0.10.0::gentoo  USE="-test" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12"
[nomerge       ]     dev-python/referencing-0.35.1::gentoo  USE="-test" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12"
[ebuild  N     ]      dev-python/rpds-py-0.18.1::gentoo  USE="-debug -test" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12 -python3_13" 0 KiB
[ebuild  N     ]       dev-util/maturin-1.5.1-r1::gentoo  USE="ssl -debug -doc -test" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12 -python3_13" 0 KiB
[nomerge       ] gnome-base/nautilus-45.2.1-r1::gentoo  USE="cloudproviders gstreamer introspection previewer sendto -gnome -gtk-doc (-selinux) -test"
[nomerge       ]  gnome-extra/sushi-45.0::gentoo  USE="X wayland"
[nomerge       ]   dev-libs/gjs-1.78.5::gentoo  USE="cairo readline -examples -sysprof -test"
[nomerge       ]    dev-lang/spidermonkey-115.11.0:115::gentoo  USE="jit -clang -debug -lto -test"
[ebuild     UD ]     virtual/rust-1.77.1:0/llvm-17::gentoo [1.78.0:0/llvm-18::gentoo] USE="profiler rustfmt" ABI_X86="32 (64) (-x32)" 0 KiB
[ebuild  N     ]      dev-lang/rust-bin-1.77.1:stable::gentoo  USE="profiler rustfmt (-big-endian) -clippy -doc (-prefix) -rust-analyzer -rust-src -verify-sig" ABI_X86="32 (64) (-x32)" CPU_FLAGS_X86="sse2" 0 KiB
[nomerge       ] dev-python/jellyfish-1.0.4::gentoo  USE="-debug -test" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12 -python3_13"
[nomerge       ]  virtual/rust-1.78.0:0/llvm-18::gentoo  USE="profiler rustfmt" ABI_X86="32 (64) (-x32)"
[ebuild  N     ]   dev-lang/rust-bin-1.78.0:stable::gentoo  USE="profiler rustfmt (-big-endian) -clippy -doc (-prefix) -rust-analyzer -rust-src -verify-sig" ABI_X86="32 (64) (-x32)" CPU_FLAGS_X86="sse2" 0 KiB

Total: 6 packages (1 downgrade, 5 new), Size of downloads: 0 KiB

!!! Multiple package instances within a single package slot have been pulled
!!! into the dependency graph, resulting in a slot conflict:

virtual/rust:0

  (virtual/rust-1.78.0:0/llvm-18::gentoo, installed) USE="profiler rustfmt" ABI_X86="32 (64) (-x32)" pulled in by
    =virtual/rust-1.78.0 required by (dev-util/maturin-1.5.1-r1:0/0::gentoo, ebuild scheduled for merge) USE="ssl -debug -doc -test" ABI_X86="(64)" PYTHON_TARGETS="python3_11 -pypy3 -python3_10 -python3_12 -python3_13"
    ^             ^^^^^^                                                                                                                                                                                                                                                                                                                                                                                                                                                       
    (and 2 more with the same problem)

  (virtual/rust-1.77.1:0/llvm-17::gentoo, ebuild scheduled for merge) USE="profiler rustfmt" ABI_X86="32 (64) (-x32)" pulled in by
    =virtual/rust-1.77.1 required by (dev-lang/spidermonkey-115.11.0:115/115::gentoo, installed) USE="jit -clang -debug -lto -test" ABI_X86="(64)"
    ^             ^^^^^^                                                                                                                                                                                                                                                                                                   
    <virtual/rust-1.78 required by (dev-lang/spidermonkey-115.11.0:115/115::gentoo, installed) USE="jit -clang -debug -lto -test" ABI_X86="(64)"
    ^             ^^^^                                                                                                                                                                                                                                                                                                   

dev-lang/rust-bin:stable

  (dev-lang/rust-bin-1.78.0:stable/stable::gentoo, ebuild scheduled for merge) USE="profiler rustfmt (-big-endian) -clippy -doc (-prefix) -rust-analyzer -rust-src -verify-sig" ABI_X86="32 (64) (-x32)" CPU_FLAGS_X86="sse2" pulled in by
    ~dev-lang/rust-bin-1.78.0[profiler?,rustfmt?,abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_s390_32(-)?,abi_s390_64(-)?] required by (virtual/rust-1.78.0:0/llvm-18::gentoo, installed) USE="profiler rustfmt" ABI_X86="32 (64) (-x32)"
    ^                  ^^^^^^                                                                                                                                                                                                                                                                                                                                                                                                                         

  (dev-lang/rust-bin-1.77.1:stable/stable::gentoo, ebuild scheduled for merge) USE="profiler rustfmt (-big-endian) -clippy -doc (-prefix) -rust-analyzer -rust-src -verify-sig" ABI_X86="32 (64) (-x32)" CPU_FLAGS_X86="sse2" pulled in by
    ~dev-lang/rust-bin-1.77.1[profiler?,rustfmt?,abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_s390_32(-)?,abi_s390_64(-)?] required by (virtual/rust-1.77.1:0/llvm-17::gentoo, ebuild scheduled for merge) USE="profiler rustfmt" ABI_X86="32 (64) (-x32)"
    ^                  ^^^^^^                                                                                                                                                                                                                                                                                                                                                                                                                                           


Last edited by jfo on Tue Jun 04, 2024 3:53 pm; edited 1 time in total
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ian.au
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Joined: 07 Apr 2011
Posts: 606
Location: Australia

PostPosted: Tue Jun 04, 2024 2:45 am    Post subject: Reply with quote

well rust-bin:1.78 is unstable so maybe you've got some keywords to edit in /etc/portage/package.accept_keywords?

I'm not sure about the reference to rust:2.18 - assume that's a typo.
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logrusx
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Joined: 22 Feb 2018
Posts: 2419

PostPosted: Tue Jun 04, 2024 6:09 am    Post subject: Re: profile update 23 fails Reply with quote

jfo wrote:
Hello

this weekend I attempted to update to profile 23. In brief, I followed all instructions
apparently without any issue until I ran
Code:

emerge --emptytree -p @world


I have something like 3300 packages. Rebuilding packages went normally until after
processing something like 1500 packages emerge stopped with no helpful message.
Code:

emerge --resume --skip-first

returned "nothing left to do".

When I run
Code:

emerge --emptytree -p @world

I get
Code:
 


!!! The following update(s) have been skipped due to unsatisfied dependencies
!!! triggered by backtracking:

dev-lang/spidermonkey:115



As far as I can tell the issue seems to be that spidermonkey wants rust <1.78
even though my system has rust 1.78.0 installed. However,

Code:

emerge -Dup @world

returns nothing whatsoever.

spiderdemonkey is needed by dev-libs/gjs, which in turn is a dependency of app-crypt/libsecret.

At this point I am not sure at all how to proceed. Any help/suggestions would appreciated.


This is not an error, you should have not picked on it. You should have preserved the original message portage gave you, perhaps with a build.log.

Now you've got yourself into an unpleasant situation. You don't know which packages were build and which weren't. I recommend doing the --emptytree part using binary packages.

Also, did you try to do both python an profile migration?

Best Regards,
Georgi
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jfo
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Joined: 07 Sep 2015
Posts: 60

PostPosted: Tue Jun 04, 2024 1:34 pm    Post subject: Reply with quote

No python migration.

In frustration I decided to mask both rust-bin-1.78 and virtual/rust-1.78 even though I could not figure out why portage insisted on it.
I then did
Code:

emerge -Du @world

and it re-emerged about 4 dependencies. After that both
Code:

emerge --backtrack=0 -avuDpt @world

Code:

emerge --emptytree -p @world

reported no conflict. So I restarted
Code:

emerge --emptytree @world

from scratch and I expect it will be running for a while (more than 3000 packages) ....

At this point I really believe that the instructions for upgrading the profile are inadequate.
There is no information about what may go wrong and even less about what the
best course of action might be in the event something does.

My (possibly incomplete) understanding of the motivation for --emptytree is that the new profile
introduced some changes in the toolchain so all binaries need to be recompiled with the new
toolchain settings. Since the main elements of the toolchain have been rebuilt before emerge --emptytree
was invoked for the first time, and since emerge --emptytree rebuilds everything (including the toolchain itself),
I should be ok.
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