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russellD
n00b
Joined: 07 Oct 2014
Posts: 63
Location: 28.5797S,153.338 E
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 Posted: Sun Jun 09, 2024 3:22 pm Post subject: Emerge stalling with python3.11 hanging |
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Hi All,
Emerge is stalling on "emerge -DunNav @world" on installing the first package.
Using "top" from cli, can be seen that python3.11 is maxing out one thread.
Python3.11 sits running at 100% and emerge isn't moving on to the next packages.
Thanks in advance!
your help is very much appreciated!
FYI:
emerge --info:
| Code: | Portage 3.0.63 (python 3.11.9-final-0, default/amd64/20/desktop, gcc-13, glibc-2.39-r6, 6.1.12-x86_64 x86_64)
=================================================================
System uname: Linux-6.1.12-x86_64-x86_64-Intel-R-_Xeon-R-_CPU_W3680_@_3.33GHz-with-glibc2.39
KiB Mem: 24603188 total, 7550908 free
KiB Swap: 4194300 total, 4194300 free
Timestamp of repository amano-kenji: Thu, 06 Jun 2024 20:49:19 +0000
Head commit of repository amano-kenji: 948cb7bef6e2ad31afe1e9d96788425d34c826de
Timestamp of repository gig: Thu, 06 Jun 2024 20:49:11 +0000
Head commit of repository gig: 3698ab97600ebad3bb2a70063b5bf11116c8e7c9
Timestamp of repository guru: Sat, 08 Jun 2024 22:48:55 +0000
Head commit of repository guru: 975045a574a42361ed226bb00cab13e2ab456427
Timestamp of repository metahax: Sat, 08 Jun 2024 16:03:48 +0000
Head commit of repository metahax: eace20c23c6ce14ba95bb2f27b87fc6f4d90b97c
Timestamp of repository pentoo: Sun, 09 Jun 2024 03:03:49 +0000
Head commit of repository pentoo: 28330b1a8e76017d3853321eddcf14cc22fb3948
Timestamp of repository r7l: Tue, 04 Jun 2024 08:20:29 +0000
Head commit of repository r7l: a1cc354926e528cc0ddb3d471e3759cc92bf6548
Timestamp of repository stefantalpalaru: Sat, 08 Jun 2024 09:34:46 +0000
Head commit of repository stefantalpalaru: 34a5c8ff94cff74dbb6f50150e4053d148bcae40
Timestamp of repository torbrowser: Thu, 06 Jun 2024 20:49:07 +0000
Head commit of repository torbrowser: ac0274cfdbe6fea24fb3291f09ebc2ea82ed05d7
Timestamp of repository gentoo: Fri, 07 Jun 2024 05:30:01 +0000
sh bash 5.1_p16-r6
ld GNU ld (Gentoo 2.42 p3) 2.42.0
distcc[11428] (dcc_mkdir) ERROR: mkdir '/var/tmp/portage/.distcc/state' failed: No such file or directory [disabled]
ccache version 4.9.1 [enabled]
app-misc/pax-utils: 1.3.7::gentoo
app-shells/bash: 5.1_p16-r6::gentoo
dev-build/autoconf: 2.71-r7::gentoo
dev-build/automake: 1.16.5-r2::gentoo
dev-build/cmake: 3.28.5::gentoo
dev-build/libtool: 2.4.7_rc73::gentoo
dev-build/make: 4.4.1-r1::gentoo
dev-build/meson: 1.4.0-r1::gentoo
dev-java/java-config: 2.3.3-r1::gentoo
dev-lang/perl: 5.38.2-r3::gentoo
dev-lang/python: 3.10.14_p1::gentoo, 3.11.9::gentoo, 3.12.3::gentoo
dev-lang/rust: 1.77.1::gentoo
dev-util/ccache: 4.9.1-r1::gentoo
sys-apps/baselayout: 2.15::gentoo
sys-apps/openrc: 0.54::gentoo
sys-apps/sandbox: 2.38::gentoo
sys-devel/autoconf: 2.71-r5::gentoo
sys-devel/automake: 1.16.5::gentoo
sys-devel/binutils: 2.42-r1::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang: 17.0.6::gentoo
sys-devel/gcc: 13.2.1_p20240210::gentoo
sys-devel/gcc-config: 2.11::gentoo
sys-devel/llvm: 17.0.6::gentoo
sys-kernel/linux-headers: 6.6-r1::gentoo (virtual/os-headers)
sys-libs/glibc: 2.39-r6::gentoo
Repositories:
amano-kenji
location: /var/db/repos/amano-kenji
sync-type: git
sync-uri: https://github.com/gentoo-mirror/amano-kenji.git
masters: gentoo
volatile: False
custom
location: /var/calculate/custom-overlay
masters: calculate gentoo
volatile: True
gig
location: /var/db/repos/gig
sync-type: git
sync-uri: https://github.com/gentoo-mirror/gig.git
masters: gentoo
volatile: False
guru
location: /var/db/repos/guru
sync-type: git
sync-uri: https://github.com/gentoo-mirror/guru.git
masters: gentoo
volatile: False
metahax
location: /var/db/repos/metahax
sync-type: git
sync-uri: https://github.com/gentoo-mirror/metahax.git
masters: gentoo
volatile: False
pentoo
location: /var/db/repos/pentoo
sync-type: git
sync-uri: https://github.com/gentoo-mirror/pentoo.git
masters: gentoo
volatile: False
r7l
location: /var/db/repos/r7l
sync-type: git
sync-uri: https://github.com/gentoo-mirror/r7l.git
masters: gentoo
volatile: False
stefantalpalaru
location: /var/db/repos/stefantalpalaru
sync-type: git
sync-uri: https://github.com/gentoo-mirror/stefantalpalaru.git
masters: gentoo guru
volatile: False
torbrowser
location: /var/db/repos/torbrowser
sync-type: git
sync-uri: https://github.com/gentoo-mirror/torbrowser.git
masters: gentoo
volatile: False
calculate
location: /var/db/repos/calculate
sync-type: calculate
sync-uri: https://git.calculate-linux.org/calculate/calculate-overlay
masters: gentoo
priority: 50
volatile: False
distros
location: /var/db/repos/distros
sync-type: calculate
sync-uri: https://git.calculate-linux.org/calculate/distros-overlay
masters: calculate gentoo
priority: 50
volatile: False
gentoo
location: /var/db/repos/gentoo
sync-type: calculate
sync-uri: https://git.calculate-linux.org/calculate/gentoo-overlay
priority: 50
volatile: False
Installed sets: @custom
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.1/ext-active/ /etc/php/apache2-php8.2/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cgi-php8.2/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/cli-php8.2/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/fpm-php8.2/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/php/phpdbg-php8.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/calculate/distfiles"
EMERGE_DEFAULT_OPTS=" --autounmask --binpkg-changed-deps=n --binpkg-respect-use=y --jobs=4 --quiet-build=n --usepkg-exclude='x11-drivers/nvidia-drivers sys-fs/zfs-kmod' --autounmask-write y --ask --binpkg-respect-use=n"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg buildpkg-live ccache clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles getbinpkg ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="https://distfiles.gentoo.org https://mirror.calculate-linux.org/distfiles/level0"
INSTALL_MASK="/etc/systemd /lib*/systemd/*/*.service /usr/lib*/systemd/*/*.service /etc/shorewall*/* -/etc/shorewall*/shorewall*.conf"
LANG="en_AU.UTF-8"
LC_ALL=""
LDFLAGS="-Wl,--as-needed"
LEX="flex"
MAKEOPTS="-j12 -l12"
PKGDIR="/var/calculate/packages"
PORTAGE_BINHOST="https://mirror-hk.koddos.net/calculate-linux/grp/x86_64"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="3dnow 3dnowext X a52 aac acl acpi aes alsa amd64 amr audiofile avi avx bittorrent bluetooth box bzip2 cairo caps cdda cddb cdparanoia cet cgroups chm cpudetection cracklib crypt css cue cups dav1d dbus dftk djvu dri dv dvd dvdr dvdread ebook elogind encode exif faac fexif ffmpeg flac flash fma3 fma4 foomaticdb ftp gadu gd gdbm gif gphoto2 gtk heif hunspell iconv id3tag idn ieee1394 imagemagick imap introspection ios ipod ipv6 irc jabber jpeg jpeg2k lame libnotify libtirpc libwww lm-sensors logrotate lz4 lzo mad matroska mikmod mimap mmx mmxext mp3 mpeg mplayer multilib musepack ncurses networkmanager nfs nls nsplugin ogg oggvorbis openal opencore-amr openexr opengl openmp opus oscar padlock pam pcre pdf pgo pipewire png policykit popcnt postscript ppp pulseaudio quicktime raw rdesktop readline real samba sasl scanner screencast sdl seccomp semantic-desktop smp smtp speex spell split-usr srt sse sse2 sse3 sse4_1 sse4_2 sse4a ssl ssse3 svg taglib test-rust tga theora threads tiff truetype udev udisks unicode upnp upower usb userlocales v4l v4l2 vaapi vcd vdpau vhosts vnc vorbis vpx vulkan wavpack wayland webkit webp wimax win32codecs wmf wxwindows x264 x265 xanim xattr xcomposite xinerama xmp xop xv xvid xvmc zlib zstd" ABI_X86="64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="3dnow 3dnowext mmx sse sse2 * mmxext" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" GRUB_PLATFORMS="efi-64 pc" INPUT_DEVICES="libinput evdev mutouch synaptics" KERNEL="linux" L10N="en be bg bs cs da de de-1901 el es es-AR es-CL es-ES es-MX et fi fr fr-CA hr hu it kk lt lv nl pl pt pt-BR pt-PT ro ru sk sl sr sq sv uk" LCD_DEVICES="* bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PERL_FEATURES="ithreads" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31 ruby32" THEMES="CLDX" VIDEO_CARDS="nouveau nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS |
eselect python list:
| Code: | [1] python3.11
[2] python3.12 (fallback)
[3] python3.10 (fallback)
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fedeliallalinea
Administrator
Joined: 08 Mar 2003
Posts: 31023
Location: here
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| Posted: Sun Jun 09, 2024 3:29 pm Post subject: |
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The emerge command is python base, For how long did you let go of the command?
_________________
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russellD
n00b
Joined: 07 Oct 2014
Posts: 63
Location: 28.5797S,153.338 E
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| Posted: Sun Jun 09, 2024 4:12 pm Post subject: |
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Hi fedeliallalinea,
Thanks for the reply!
It was running for 10minutes before I cancelled the command. Then ~30minutes, seemed very unusual to hang on the first package.
I try a different approach overnight and run "emerge -eva1 @world"
- r |
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logrusx
Veteran
Joined: 22 Feb 2018
Posts: 1757
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| Posted: Sun Jun 09, 2024 4:16 pm Post subject: Re: Emerge stalling with python3.11 hanging |
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| russellD wrote: | Hi All,
Emerge is stalling on "emerge -DunNav @world" on installing the first package.
Using "top" from cli, can be seen that python3.11 is maxing out one thread.
Python3.11 sits running at 100% and emerge isn't moving on to the next packages.
|
Notice the bold red. It's -n for --noreplace. I think that set portage thinking a very hard about what not to replace, because this is usually used with a single package, not the whole world. Very likely you threw it in an unforeseen case which doesn't even make sense.
Emerge -eva on the other hand is absolutely not what you want. E comes from --emptytree, which means portage will emerge like there's nothing on the system. It'll emerge everything from the ground up!
Best Regards,
Georgi |
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russellD
n00b
Joined: 07 Oct 2014
Posts: 63
Location: 28.5797S,153.338 E
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| Posted: Mon Jun 10, 2024 1:49 pm Post subject: |
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Hi logrusx,
Thanks for the heads up on -u!
Taken on board.
cheers
- r |
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logrusx
Veteran
Joined: 22 Feb 2018
Posts: 1757
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| Posted: Mon Jun 10, 2024 2:04 pm Post subject: |
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| russellD wrote: | Hi logrusx,
Thanks for the heads up on -u!
Taken on board.
cheers
- r |
It's n, not u. That's why I used the longer --noreplace. But you can swap -N(--newuse) for -U which is --changed-use and will not cause unnecessary rebuilds. Use --newuse only if you're building binary packages. Newuse can cause a rebuild for a disabled use flag change on a package. It doesn't matter that an old disabled flag is dropped, the package doesn't need to be rebuilt, but --newuse is stricter and will rebuild on all changes.
Best Regards,
Georgi |
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russellD
n00b
Joined: 07 Oct 2014
Posts: 63
Location: 28.5797S,153.338 E
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| Posted: Thu Jun 13, 2024 2:54 am Post subject: |
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logrusx,
Thanks for that!
Its all now sorted and emergeing packages correctly!
- r |
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Portage & Programming
