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Bloxlord
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Joined: 06 Nov 2023
Posts: 9
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 Posted: Tue Jul 30, 2024 4:23 am Post subject: Cannot Emerge Packages. OSError:[Errno 5] Input/output error |
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| I have recently encountered an issue when emerging packages with portage. I'm not certain but I believe it started when I canceled (ctrl+c) an emerge part way and shut down my system. Whenever I attempt an "emerge -avuDN @world" I receive OSError: [Errno 5] Input/output error on the first package, which is sys-kernel/linux-firmware. I am able to emerge some packages running "emerge -avuDN @world --exclude sys-kernel/linux-firmware" which allows some packages to emerge but ultimately produces the same result. Some google searching suggests my filesystem (btrfs) is damaged but I am not sure if that's the case and apparently tools such as "btrfs check --repair" can damage your system so I am cautious about that. What is the best way to resolve this issue? Here's my portage log for reference: https://pastebin.com/U7c3xDAr |
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logrusx
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Joined: 22 Feb 2018
Posts: 2398
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| Posted: Tue Jul 30, 2024 7:54 am Post subject: |
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Look for something related in dmesg and share it.
If you've restarted since the last error, reproduce it and then look in dmesg.
Best Regards,
Georgi |
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Bloxlord
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Joined: 06 Nov 2023
Posts: 9
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| Posted: Wed Jul 31, 2024 5:19 am Post subject: |
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Thanks for the reply! I reproduced and checked dmesg, there appears to be some corruption in my root partition:
| Code: | [ 39.944840] BTRFS warning (device sda3): csum failed root 5 ino 22735681 off 0 csum 0x8941f998 expected csum 0x0f06c702 mirror 1
[ 39.944846] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12862, gen 0
[ 39.944886] BTRFS warning (device sda3): csum failed root 5 ino 22735681 off 0 csum 0x8941f998 expected csum 0x0f06c702 mirror 1
[ 39.944888] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12863, gen 0
[ 41.188022] BTRFS warning (device sda3): csum failed root 5 ino 22735666 off 0 csum 0x8941f998 expected csum 0x8b17e7c3 mirror 1
[ 41.188029] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12864, gen 0
[ 41.188066] BTRFS warning (device sda3): csum failed root 5 ino 22735666 off 0 csum 0x8941f998 expected csum 0x8b17e7c3 mirror 1
[ 41.188068] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12865, gen 0
[ 41.306629] BTRFS warning (device sda3): csum failed root 5 ino 22735682 off 0 csum 0x8941f998 expected csum 0x5a35f0db mirror 1
[ 41.306633] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12866, gen 0
[ 41.306676] BTRFS warning (device sda3): csum failed root 5 ino 22735682 off 0 csum 0x8941f998 expected csum 0x5a35f0db mirror 1
[ 41.306678] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12867, gen 0
[ 41.308484] BTRFS warning (device sda3): csum failed root 5 ino 22735681 off 0 csum 0x8941f998 expected csum 0x0f06c702 mirror 1
[ 41.308488] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12868, gen 0
[ 44.079034] BTRFS warning (device sda3): csum failed root 5 ino 22736473 off 0 csum 0x8941f998 expected csum 0xe7a7e9e4 mirror 1
[ 44.079041] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12869, gen 0
[ 44.079086] BTRFS warning (device sda3): csum failed root 5 ino 22736473 off 0 csum 0x8941f998 expected csum 0xe7a7e9e4 mirror 1
[ 44.079088] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12870, gen 0
[ 45.219404] BTRFS warning (device sda3): csum failed root 5 ino 22735690 off 0 csum 0x8941f998 expected csum 0x114ab97b mirror 1
[ 45.219411] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12871, gen 0
[ 45.219455] BTRFS warning (device sda3): csum failed root 5 ino 22735690 off 0 csum 0x8941f998 expected csum 0x114ab97b mirror 1
[ 45.219458] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12872, gen 0
[ 47.360820] BTRFS warning (device sda3): csum failed root 5 ino 22735681 off 0 csum 0x8941f998 expected csum 0x0f06c702 mirror 1
[ 47.360828] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12873, gen 0
[ 110.131359] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 0 csum 0x8941f998 expected csum 0xbbd3f900 mirror 1
[ 110.131366] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12874, gen 0
[ 110.131369] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 4096 csum 0x8941f998 expected csum 0x7dce25e8 mirror 1
[ 110.131371] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12875, gen 0
[ 110.131373] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 8192 csum 0x8941f998 expected csum 0xd8d21f68 mirror 1
[ 110.131374] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12876, gen 0
[ 110.131376] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 12288 csum 0x8941f998 expected csum 0x5ac0e2d5 mirror 1
[ 110.131377] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12877, gen 0
[ 110.131379] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 16384 csum 0x8941f998 expected csum 0x6c550eda mirror 1
[ 110.131380] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12878, gen 0
[ 110.131382] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 20480 csum 0x8941f998 expected csum 0x9ae2ae28 mirror 1
[ 110.131383] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12879, gen 0
[ 110.131384] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 24576 csum 0x8941f998 expected csum 0x06d92b4b mirror 1
[ 110.131386] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12880, gen 0
[ 110.131387] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 28672 csum 0x8941f998 expected csum 0x7df00f3e mirror 1
[ 110.131389] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12881, gen 0
[ 110.131435] BTRFS warning (device sda3): csum failed root 5 ino 12991257 off 0 csum 0x8941f998 expected csum 0xbbd3f900 mirror 1
[ 110.131437] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12882, gen 0
[ 144.884179] BTRFS warning (device sda3): csum failed root 5 ino 22735681 off 0 csum 0x8941f998 expected csum 0x0f06c702 mirror 1
[ 144.884186] BTRFS error (device sda3): bdev /dev/sda3 errs: wr 0, rd 0, flush 0, corrupt 12883, gen 0 |
Advice on how to fix this? Full dmesg here:https://pastebin.com/u3qfdzp7 |
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logrusx
Advocate
Joined: 22 Feb 2018
Posts: 2398
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| Posted: Wed Jul 31, 2024 6:16 am Post subject: |
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| Bloxlord wrote: | | Advice on how to fix this? |
I can't help with that. I'm not a BTRFS expert, but I cannot spare questioning the choice. At least we know it's not a hardware issue.
Best Regards,
Georgi |
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