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pegu
n00b
Joined: 19 Sep 2003
Posts: 55
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 Posted: Sun Sep 22, 2024 7:53 am Post subject: md file system slow: kworker/u16:0+flush-252:4 |
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I'm installing Altera Quartus, which I have done several times before on this system. But what used to take 15-20 minutes now takes a week.
It happens with the text based installer and the GUI installer. The only process I see running at 100% during this time is:
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PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
29359 root 20 0 0 0 0 R 100.0 0.0 433:13.54 kworker/u16:0+flush-252:4
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The load is not very high either and the response while running interactive tasks is just fine.
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05:10:40 up 109 days, 7:39, 2 users, load average: 2.85, 2.77, 2.81
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There are no errors in the kernel log and /proc/mdadm. I have installed the same package on other distros without problems so I don't think the problem is the Quartus installer.
The kernel version is 6.6.13-gentoo.
Update: It's not related to the Quartus installer as it takes more than two minutes to copy a 2.4M PDF file:
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$ time cp /tmp/time-series-forcasting-10324313.pdf ./documentation/math
real 2m7.088s
user 0m0.000s
sys 0m0.032s
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Any ideas as of what is causing this behavior and how to fix it? |
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NeddySeagoon
Administrator
Joined: 05 Jul 2003
Posts: 54578
Location: 56N 3W
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| Posted: Sun Sep 22, 2024 12:22 pm Post subject: |
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Tell us how the raid set is construced and on what drives.
it sounds like a drive issue that the kernel is managing to hide meanwhile, rather than kick a member out of the raid set.
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NeddySeagoon
Computer users fall into two groups:-
those that do backups
those that have never had a hard drive fail. |
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pegu
n00b
Joined: 19 Sep 2003
Posts: 55
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| Posted: Fri Sep 27, 2024 5:19 am Post subject: |
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| Code: |
# cat /proc/mdstat
Personalities : [raid0] [raid1] [raid10] [raid6] [raid5] [raid4]
md1 : active raid1 sdg2[3](S) sdh2[1] sdd2[5] sdf2[4] sda2[2](S) sdb2[0] sde2[6] sdc2[7]
524224 blocks super 1.0 [6/6] [UUUUUU]
md2 : active raid6 sdg4[3] sdh4[1] sdd4[5] sdf4[4] sda4[2] sdb4[0] sde4[6] sdc4[7]
23035502592 blocks super 1.2 level 6, 512k chunk, algorithm 2 [8/8] [UUUUUUUU]
bitmap: 5/29 pages [20KB], 65536KB chunk
md3 : active raid6 sdh3[1] sdg3[3] sdd3[5] sdf3[4] sda3[2] sdb3[0] sde3[6] sdc3[7]
402259968 blocks super 1.2 level 6, 512k chunk, algorithm 2 [8/8] [UUUUUUUU]
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It's only at md2 where I observe these issues.
md3 is working fine.
They are all on the same physical drives.
I don't see any disk related errors in the kernel logs.
It has been working fine for many years.
Checking md5/sha256 checksums of a large file sets shows no errors.
There appears to be no slowdown on read operations. Only writes.
Other hosts will mount this filesystem read-only over NFS.
md2 is an ext4 filesystem .
I have many 100GB images which are installed resulting in thousands of smaller files. Both the image files and installed files are then deleted as new versions become available.
This problem, which seems to be related to fragmentation/journaling appears to be similar:
https://unix.stackexchange.com/questions/620804/kworker-flush-99-i-o-hangs-file-write-on-machine |
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dmpogo
Advocate
Joined: 02 Sep 2004
Posts: 3425
Location: Canada
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| Posted: Fri Sep 27, 2024 5:30 am Post subject: |
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| pegu wrote: | | Code: |
# cat /proc/mdstat
Personalities : [raid0] [raid1] [raid10] [raid6] [raid5] [raid4]
md1 : active raid1 sdg2[3](S) sdh2[1] sdd2[5] sdf2[4] sda2[2](S) sdb2[0] sde2[6] sdc2[7]
524224 blocks super 1.0 [6/6] [UUUUUU]
md2 : active raid6 sdg4[3] sdh4[1] sdd4[5] sdf4[4] sda4[2] sdb4[0] sde4[6] sdc4[7]
23035502592 blocks super 1.2 level 6, 512k chunk, algorithm 2 [8/8] [UUUUUUUU]
bitmap: 5/29 pages [20KB], 65536KB chunk
md3 : active raid6 sdh3[1] sdg3[3] sdd3[5] sdf3[4] sda3[2] sdb3[0] sde3[6] sdc3[7]
402259968 blocks super 1.2 level 6, 512k chunk, algorithm 2 [8/8] [UUUUUUUU]
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It's only at md2 where I observe these issues.
md3 is working fine.
They are all on the same physical drives.
I don't see any disk related errors in the kernel logs.
It has been working fine for many years.
Checking md5/sha256 checksums of a large file sets shows no errors.
There appears to be no slowdown on read operations. Only writes.
Other hosts will mount this filesystem read-only over NFS.
md2 is an ext4 filesystem .
I have many 100GB images which are installed resulting in thousands of smaller files. Both the image files and installed files are then deleted as new versions become available.
This problem, which seems to be related to fragmentation/journaling appears to be similar:
https://unix.stackexchange.com/questions/620804/kworker-flush-99-i-o-hangs-file-write-on-machine |
So it is on raid6 Can you take on disk down at a time from md2, and see whether anything improves ? |
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Kernel & Hardware
