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n00b
Joined: 07 Mar 2006
Posts: 63
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 Posted: Tue Mar 10, 2009 3:24 am Post subject: R-2.8.1 problems with libRlapack.so |
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I'm having problems with the latest verison of R. Compiling R with the options "X bash-completion cairo java jpeg lapack nls png readline tk" options works fine, the program works fine, everything seems fine. However, there are some errors that I can't seem to understand. For example, the Sweave.sty file isn't found by latex, unless I modify the PATH variable. When I ran the Matrix package, it complained that the libRlapack.so was not found. I reinstalled it, it stopped complaining. Now, when I run revdep-rebuild, it gives the following:
| Code: | # revdep-rebuild -p
* Configuring search environment for revdep-rebuild
* Checking reverse dependencies
* Packages containing binaries and libraries broken by a package update
* will be emerged.
* Collecting system binaries and libraries
* Generated new 1_files.rr
* Collecting complete LD_LIBRARY_PATH
* Generated new 2_ldpath.rr
* Checking dynamic linking consistency
[ 32% ] * broken /usr/lib/R/library/ape/libs/ape.so (requires libRlapack.so)
* broken /usr/lib/R/library/kernlab/libs/kernlab.so (requires libRlapack.so)
* broken /usr/lib/R/library/lme4/libs/lme4.so (requires libRlapack.so)
* broken /usr/lib/R/library/mclust/libs/mclust.so (requires libRlapack.so)
* broken /usr/lib/R/library/party/libs/party.so (requires libRlapack.so)
[ 33% ] * broken /usr/lib/R/library/quantreg/libs/quantreg.so (requires libRlapack.so)
* broken /usr/lib/R/library/robustbase/libs/robustbase.so (requires libRlapack.so)
[ 37% ] * broken /usr/lib/R/library/urca/libs/urca.so (requires libRlapack.so)
[ 100% ]
* Generated new 3_broken.rr
* Assigning files to packages
* !!! /usr/lib/R/library/ape/libs/ape.so not owned by any package is broken !!!
* /usr/lib/R/library/ape/libs/ape.so -> (none)
* !!! /usr/lib/R/library/kernlab/libs/kernlab.so not owned by any package is broken !!!
* /usr/lib/R/library/kernlab/libs/kernlab.so -> (none)
* !!! /usr/lib/R/library/lme4/libs/lme4.so not owned by any package is broken !!!
* /usr/lib/R/library/lme4/libs/lme4.so -> (none)
* !!! /usr/lib/R/library/mclust/libs/mclust.so not owned by any package is broken !!!
* /usr/lib/R/library/mclust/libs/mclust.so -> (none)
* !!! /usr/lib/R/library/party/libs/party.so not owned by any package is broken !!!
* /usr/lib/R/library/party/libs/party.so -> (none)
* !!! /usr/lib/R/library/quantreg/libs/quantreg.so not owned by any package is broken !!!
* /usr/lib/R/library/quantreg/libs/quantreg.so -> (none)
* !!! /usr/lib/R/library/robustbase/libs/robustbase.so not owned by any package is broken !!!
* /usr/lib/R/library/robustbase/libs/robustbase.so -> (none)
* !!! /usr/lib/R/library/urca/libs/urca.so not owned by any package is broken !!!
* /usr/lib/R/library/urca/libs/urca.so -> (none)
* Generated new 4_raw.rr and 4_owners.rr
* Found some broken files, but none of them were associated with known packages
* Unable to proceed with automatic repairs.
* The broken files are listed in 4_owners.rr |
Can anyone give me some guidance on how to fix these problems?
-jekyll |
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